PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0065s0053.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 227aa    MW: 25700.5 Da    PI: 6.3024
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0065s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.88.7e-55441471101
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql+sfw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fi+eltlrsw+h+eenkrrtl+k+diaaa+ rtd
  Kaladp0065s0053.1.p  44 QLQSFWANQhqeIERVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFIFELTLRSWNHTEENKRRTLQKNDIAAAIGRTD 133
                          89*****999999***************************************************************************** PP

                NF-YC  88 ifdflvdivprdel 101
                          ifdflvdivpr++l
  Kaladp0065s0053.1.p 134 IFDFLVDIVPREDL 147
                          ***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.36E-3327138IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.6E-3759129IPR009072Histone-fold
PfamPF008082.2E-2166129IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MPYGMPPYQP NQMTVAAPGA ASGGQHQLAH QHINPLQQQQ LQQQLQSFWA NQHQEIERVT  60
DFKNHSLPLA RIKKIMKADE DVRMISAEAP VIFARACEMF IFELTLRSWN HTEENKRRTL  120
QKNDIAAAIG RTDIFDFLVD IVPREDLKDE MLGSVPRGSI PVGAPADMLP YPYMPMQHMP  180
QVGTPGMIMG KPMMDPSMYA QQPHPYMAPQ MWPQPQQPQE QSSSDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B9e-40591441297NF-YC
4awl_C7e-4059144994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B7e-4059144994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4g91_C1e-39321446119HapE
4g92_C1e-39321446119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494629.11e-120PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B26e-85NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLQ2HTM11e-120Q2HTM1_MEDTR; Histone-fold/TFIID-TAF/NF-Y
STRINGVIT_14s0128g00250.t011e-113(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-78nuclear factor Y, subunit C9